Xingyu Su

From Self-Distillation to Self-Practice: Privileged Information for Multi-Turn Agents

Xingyu Su, Abhishek Kumar, Qing Ping, Youzhi Luo, Jonathan Buck, Zach Zhang, Subramanian Chidambaram, Vinayak Arannil

arXiv, 2026

Data-Efficient Autoregressive-to-Diffusion Language Models via On-Policy Distillation

Xingyu Su*, Jacob Helwig*, Shubham Parashar*, Atharv Chagi, Lakshmi Jotsna, Degui Zhi, James Caverlee, Dileep Kalathil, Shuiwang Ji

arXiv, 2026

A Joint Diffusion Model with Pre-Trained Priors for RNA Sequence–Structure Co-Design

Xiner Li, Masatoshi Uehara, Xingyu Su, Gabriele Scalia, Shuiwang Ji

International Conference on Learning Representations (ICLR), 2026

Generative Artificial Intelligence for Biology: Toward Unifying Models, Algorithms, and Modalities

Xiner Li*, Xingyu Su*, Yuchao Lin, Chenyu Wang, Yijia Xiao, Tianyu Liu, Chi Han, Michael Sun, Montgomery Bohde, Anna Hart, Wendi Yu, Masatoshi Uehara, Gabriele Scalia, Xiao Luo, Carl Edwards, Wengong Jin, Jianwen Xie, Ehsan Hajiramezanali, Edward De Brouwer, Qing Sun, Byung-Jun Yoon, Xiaoning Qian, Marinka Zitnik, Heng Ji, Hongyu Zhao, Wei Wang, Shuiwang Ji

ChemRxiv, 2026

Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physics

Lianhao Zhou, Hongyi Ling, Cong Fu, Yepeng Huang, Michael Sun, Wendi Yu, Xiaoxuan Wang, Xiner Li, Xingyu Su, Junkai Zhang, Xiusi Chen, Chenxing Liang, Xiaofeng Qian, Heng Ji, Wei Wang, Marinka Zitnik, Shuiwang Ji

arXiv, 2025

Iterative Distillation for Reward-Guided Fine-Tuning of Diffusion Models in Biomolecular Design

Xingyu Su*, Xiner Li*, Masatoshi Uehara*, Sunwoo Kim, Yulai Zhao, Gabriele Scalia, Ehsan Hajiramezanali, Tommaso Biancalani, Degui Zhi, Shuiwang Ji

International Conference on Learning Representations (ICLR), 2026

Dynamic Search for Inference-Time Alignment in Diffusion Models

Xiner Li*, Masatoshi Uehara*, Xingyu Su, Gabriele Scalia, Tommaso Biancalani, Aviv Regev, Sergey Levine, Shuiwang Ji

arXiv, 2025

Reward-Guided Iterative Refinement in Diffusion Models at Test-Time with Applications to Protein and DNA Design

Masatoshi Uehara*, Xingyu Su*, Yulai Zhao, Xiner Li, Aviv Regev, Shuiwang Ji, Sergey Levine, Tommaso Biancalani

International Conference on Machine Learning (ICML), 2025

Learning to Discover Regulatory Elements for Gene Expression Prediction

Xingyu Su*, Haiyang Yu*, Degui Zhi, Shuiwang Ji

International Conference on Learning Representations (ICLR Oral), 2025

Language Models for Controllable DNA Sequence Design

Xingyu Su, Xiner Li, Yuchao Lin, Ziqian Xie, Degui Zhi, Shuiwang Ji

Transactions on Machine Learning Research (TMLR), 2025